Package index • mse

All functions

initialize(<FLiem>) iter(<FLiem>): S4 class FLiem
FLmse() om() `om<-`() tracking() `tracking<-`() control(<FLmse>) oem() `oem<-`() args(<FLmse>) `args<-`(<FLmse>,<list>): S4 class FLmse
FLoem() observations() `observations<-`() deviances(<FLoem>) `deviances<-`(<FLoem>,<list>) show(<FLoem>) iter(<FLoem>) combine(<FLoem>,<FLoem>): Specification for the observation error model (OEM).
FLom() stock(<FLom>) `stock<-`(<FLom>,<FLStock>) sr(<FLom>) `sr<-`(<FLom>,<FLSR>) combine(<FLom>,<FLom>) `om<-`(<FLmse>,<FLo>) `tracking<-`(<FLmse>,<data.table>) `control<-`(<FLmse>,<mpCtrl>) `oem<-`(<FLmse>,<FLoem>): A class for an operating model (OM)
cpue.ind(): Computes CPUE-based Indicators of changes in Stock Abundance
debug() undebug(<mseCtrl>,<missing>) undebug(<mpCtrl>,<character>) undebug(<mpCtrl>,<missing>) undebug(<FLo>,<ANY>): Debugging mse modules
effort.is(): effort implementation function
fixedC.hcr(): A fixed target C
fixedF.hcr(): A fixed target F
fwd.om(): A method to project the operating model (OM)
hockeystick.hcr(): Hockey-stick Harvest Control Rule
hr(<FLombf>): hr method for FLombf
index.hat(<FLIndexBiomass>,<FLStock>): Predicted index of abundance from abundance estimates
indicator.is(): indicator implementation function
initiate(): Initializes a population for a given virgin biomass.
mp(): mp executes a single run of a Management Procedure
initialize(<mpCtrl>) est() `est<-`() phcr() `phcr<-`() hcr() `hcr<-`() isys() `isys<-`() tm() `tm<-`() show(<mpCtrl>) iters(<mpCtrl>) iter(<mpCtrl>) method(<mpCtrl>) `method<-`(<mpCtrl>,<function>) `args<-`(<mpCtrl>,<function>) debug(<mpCtrl>,<character>): S4 class mpCtrl
mpDispatch(): Title
initialize(<mseCtrl>) method() `method<-`() args() `args<-`() show(<mseCtrl>) exists(): S4 class mseCtrl
p4om: FLom object for North sea plaice
partialHR(): hr
perfect.oem(): A perfect observation of catch and abundances-at-age.
perfect.sa(): A perfect 'estimate' of abundances, catches and harvest.
performance(<FLQuants>) performance(<FLStock>) performance(<FLStocks>) performance(<list>) performance(<FLom>): Compute performance statistics
sampling.oem(): sampling.oem
selectMetric(): Select and/or Compute a Metric from the stk and ind inputs
setcontrol(): setcontrol Modify on the fly the arguments on any mpCtrl module
split.is(): Split a biol target across fleets by setting relative 'quant' proportions
statistics: A complete set of performance statistics
tac.is(): TAC implementation system module
tunebisect(): Tune Management Procedures Using Bisection Method