performance() repeated the run column for certain calls
.combinegoFish now uses combine to merge refpts so it works if refpts has more than one row
USER-VISIBLE CHANGES
tac.is now accepts a different number of years to compute F status quo in intermediate year projection
Altered default metrics for plot(FLom), same as plot(FLstock)
tracking for om (F.om, Sb.om, B.om abnd C.om) now reflect the advice year value (ay)
mps has a clearer interface and dispatch for parallelization
mse 2.4.4
BUG FIXES
Depends package changed to get all of FLasher loaded
USER-VISIBLE CHANGES
‘management_lag’ in mp() args must be greater than 0
USER-VISIBLE CHANGES
mp() does not accept a management_lag smaller than 1, otherwise OM won’t update.
mse 2.4.3
BUG FIXES
The correct ‘fy’ is now set in mp() when ‘data_lag’, ‘management_lag’ and ‘frq’ are all > 1
mse 2.4.2
NEW FEATURES
The setcontrol function allows changes on the fly to an mpCtrl object, for example inside a call to mp(), e.g. mp(om, control=setcontrol(ctrl, hcr=list(min=0.1)) to change the existing value for the min argument to a new one.
USER-VISIBLE CHANGES
plot_hockeystick.hcr uses geom_label rather than geom_text.
oem will simplify stock according to dims of observations$stk only
BUG FIXES
iter(FLmses) used wrong name for object when subsetting tracking data.table.
mse 2.2.2
NEW FEATURES
New hockeystick.hcr, can be used to set multiple HS-shaped HCRs.
mse 2.2
NEW FEATURES
The FLom class now derives from a parent virtual class FLo.
A FLombf class contains slots @biols, of class FLBiols, and @fisheries, of class FLFisheries.
mp() now class a goFish method for each of the FLo-derived classes: FLom and FLombf.
oem modules need to take an FLo-based object as input.
tracking is handled by methods dealing with stock being of either FLStock or FLStocks class.
Added performance(FLombf) to be called by performance(FLmse).
merge(FLQuant, data.table) method to assemble output tables.
debugf() method for FLom and FLombf, applies to projection slot.
USER-VISIBLE CHANGES
Argument indicators in performance() has been renamed statistics, to clarify the role of that element. Indicator is now restricted to refer to empirical metrics obtained from operating model observations that are used to provide indications of changes in stock status. For example, catch rates by fleet.
dims(FLombf) returns unit and season data.
mse 2.1
NEW FEATURES
metrics method for FLmse, calls metrics(FLStock).
control(FLmse) and control(FLmse)<- can extract or modify individual list elements.
